敬告作者朋友
最近我们发现,有一些假冒本刊在线投稿系统的网站,采用与《麦类作物学报》相似的网页、网址和邮箱发送征稿通知以及收取审稿费、版面费的信息,以骗取钱财。详细情况见【通知公告】栏的“再次提醒作者朋友:谨防上当受骗!!!”

关闭
郝小聪,王伟伟,汪德州,房兆峰,柳 珊,朱文根,逄子剑,张胜全,赵昌平,张风廷,唐益苗.小麦PHO基因家族全基因组鉴定及表达分析[J].麦类作物学报,2023,(1):26
小麦PHO基因家族全基因组鉴定及表达分析
Genome-Wide Identification and Expression Analysis of PHO Gene Family in Wheat
  
DOI:10.7606/j.issn.1009-1041.2023.01.03
中文关键词:  小麦  PHO基因家族  进化系统分析  表达分析  磷转运蛋白
英文关键词:Wheat  PHO gene family  Evolutionary system analysis  Expression analysis  Phosphorus transporter
基金项目:北京市农林科学院科技创新能力建设专项(KJCX20200423);基因组学育种协同创新中心资助项目(KJCX201907-2)
作者单位
郝小聪,王伟伟,汪德州,房兆峰,柳 珊,朱文根,逄子剑,张胜全,赵昌平,张风廷,唐益苗 (1.北京市农林科学院杂交小麦所北京 100097
2.新疆莎车县巴格阿瓦提乡政府新疆莎车 844715) 
摘要点击次数: 483
全文下载次数: 608
中文摘要:
      PHO基因家族主要参与磷酸盐的转运,在植物生长发育中起重要作用。为研究小麦PHO基因家族成员的潜在功能,本研究从小麦全基因组中鉴定PHO基因家族成员,并利用生物信息学手段对其基因结构特征、蛋白结构域、系统进化、顺式作用元件及表达特性进行分析。结果在小麦全基因组中共鉴定到12个PHO基因家族成员,所有成员均含有SPX和EXS结构域。系统进化、保守结构域和基因结构分析发现,小麦PHO蛋白与拟南芥PHO1-H1蛋白以及水稻PHO1蛋白亲缘关系较近;除TaPHO7、TaPHO10、TaPHO11和TaPHO12蛋白缺少部分基序外,其余小麦PHO蛋白均具有完整基序,且同一亚组内的成员具有相似的蛋白保守结构域和基因结构,说明PHO亚家族成员间高度保守。顺式作用元件分析发现,小麦PHO基因启动子区域含有与磷调控相关的激素诱导、光响应、低温响应等元件。基于RNA_seq数据的组织特异性分析发现,大部分PHO基因在根中的表达量较高。qRT-PCR分析发现,低磷胁迫处理下磷高效小麦品种小偃54地下部分(根) TaPHO7 TaPHO8基因的表达量显著高于对照。
英文摘要:
      PHO gene family is mainly involved in phosphate transport and plays important roles in plant growth and development. In order to study the function of PHO gene family members in wheat,PHO genes were identified from the whole wheat genome,and their gene structure,conserved domain of proteins,phylogenic relationship,cis-acting elements and expression characteristics were analyzed using bioinformatics methods. The results showed that 12 members of the PHO gene family were screened and identified in the wheat genome database,and all members contained SPX and EXS domains. Through phylogenetic analysis,conserved domains and gene structure analysis,it was found that the PHO proteins of wheat were closely related to PHO1-H1 protein of Arabidopsis and PHO1 protein of rice. Except for TaPHO7,TaPHO10,TaPHO11 and TaPHO12 proteins lacking partial motifs,other PHO proteins have complete motifs,and in the same subgroup,PHO gene family members have similar conserved domains and gene structure,demonstrating that the PHO subfamily members are highly conserved. Cis-acting element analysis showed that the promoter region of wheat PHO genes have hormone induction,light response and low temperature response elements related to phosphorus regulation. Tissue-specific analysis found that most genes were highly expressed in roots based on RNA_seq data. Twelve PHO genes were analyzed by qRT-PCR,and it was found that TaPHO7 and TaPHO8 had higher expression levels in the underground part(root) of Xiaoyan 54 after low phosphorus stress treatment,compared to control.
查看全文  查看/发表评论  下载PDF阅读器
关闭

您是第19564092位访问者
版权所有麦类作物学报编辑部
京ICP备09084417号
技术支持: 本系统由北京勤云科技发展有限公司设计